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Accueil du site > Equipes de recherche > Génomique fonctionnelle de l’Eucalyptus > Publications / Thèses > Articles 2011 - 2015

Articles 2011 - 2015


Barriere, Y., A. Courtial, M. Soler and J. Grima-Pettenati (2015). "Toward the identification of genes underlying maize QTLs for lignin content, focusing on colocalizations with lignin biosynthetic genes and their regulatory MYB and NAC transcription factors." Molecular Breeding 35(3).

Cao, P. B., S. Azar, H. SanClemente, F. Mounet, C. Dunand, G. Marque, C. Marque and C. Teulieres (2015). "Genome-wide analysis of the AP2/ERF family in Eucalyptus grandis : an intriguing over-representation of stress-responsive DREB1/CBF genes." PLoS One 10(4) : e0121041.

Carocha, V., M. Soler, C. Hefer, H. Cassan-Wang, P. Fevereiro, A. A. Myburg, J. A. Paiva and J. Grima-Pettenati (2015). "Genome-wide analysis of the lignin toolbox of Eucalyptus grandis." New Phytol 206(4) : 1297-1313.

Hussey, S. G., M. N. Saidi, C. A. Hefer, A. A. Myburg and J. Grima-Pettenati (2015). "Structural, evolutionary and functional analysis of the NAC domain protein family in Eucalyptus." New Phytol 206(4) : 1337-1350.

Li, Q., H. Yu, P. B. Cao, N. Fawal, C. Mathe, S. Azar, H. Cassan-Wang, A. A. Myburg, J. Grima-Pettenati, C. Marque, C. Teulieres and C. Dunand (2015). "Explosive Tandem and Segmental Duplications of Multigenic Families in Eucalyptus grandis." Genome Biol Evol 7(4) : 1068-1081.

Soler, M., E. L. Camargo, V. Carocha, H. Cassan-Wang, H. San Clemente, B. Savelli, C. A. Hefer, J. A. Paiva, A. A. Myburg and J. Grima-Pettenati (2015). "The Eucalyptus grandis R2R3-MYB transcription factor family : evidence for woody growth-related evolution and function." New Phytol 206(4) : 1364-1377.

Yu, H., M. Soler, H. San Clemente, I. Mila, J. A. Paiva, A. A. Myburg, M. Bouzayen, J. Grima-Pettenati and H. Cassan-Wang (2015). "Comprehensive Genome-Wide Analysis of the Aux/IAA Gene Family in Eucalyptus : Evidence for the Role of EgrIAA4 in Wood Formation." Plant Cell Physiol 56(4) : 700-714.


Yu, H., M. Soler, I. Mila, H. San Clemente, B. Savelli, C. Dunand, J. A. Paiva, A. A. Myburg, M. Bouzayen, J. Grima-Pettenati and H. Cassan-Wang (2014). "Genome-wide characterization and expression profiling of the AUXIN RESPONSE FACTOR (ARF) gene family in Eucalyptus grandis." PLoS One 9(9) : e108906.

Myburg A, Grattapaglia D, Tuskan G, Hellsten U, Hayes R, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein D, Dubchak I, Poliakov A, Mizrachi E, Kullan A, Van Jaarsveld I, Hussey S, Pinard D, Silva-Junior O, Togawa R, Pappas M, Faria D, Sansaloni C, Petroli C, X Yang, P Ranjan, T Tschaplinski, C Ye, Ting Li, L Sterck, K Vanneste, F Murat, Soler M, San Clemente H , Saidi N, Cassan-Wang H, Dunand C, Hefer C, Bornberg-Bauer E, Kersting A, Vinnig K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd A, Liston A, Spatafora J, Dharmawardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira A, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel S, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones R, Steane D, Vaillancourt R, Potts B, Barry K, Pappas G Jr, Strauss S, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar D, Schmutz J, Van der Merwe K, Singh P, Joubert F (2014) The genome of Eucalyptus grandis - a global tree for fiber and energy Nature 510(7505), 356–362 doi:10.1038/nature13308

Wisniewski M, Nassuth A, Teulières C, Marque C, Rowland J, Cao PB, Brown A (2014) Genomics of cold hardiness in woody plants. Crit Rev Plant Sci 33 : 92-124.

Courtial A, Méchin V, Reymond M, Grima-Pettenati J, Barrière Y (2014). Colocalizations between several QTLs for cell wall degradability and composition in the F288 x F271 early maize RIL progeny raise the question of the nature of the possible underlying determinants and breeding targets for biofuel capacity. BioEnergy Res 7 : 142-156.

De la Torre F, Rodríguez R, Gago J, Villar B, Álvarez-Otero R, Grima-Pettenati J, Gallego PP (2014) Genetic transformation of Eucalyptus globulus : advantages of using the vascular-specific EgCCR over the constitutive CaMV35S promoter. Plant Cell Tiss Organ Cult 117 : 77-84 .

Camargo ELO, Nascimento LC, Soler M, Salazar MM, Lepikson-Neto J, Marques WL, Alves A, Teixeira PJPL, Mieczkowski P, Carazzolle MF, Martinez Y, Deckmann AC, Rodrigues JC, Grima-Pettenati J, Pereira G. (2014). Contrasting nitrogen fertilization treatments impact xylem gene expression and secondary cell wall lignification in Eucalyptus. BMC Plant Biol 14:256


Keller G, Cao PB, San Clemente H, El Kayal W, Marque C, and Teulières C. (2013) Transcript profiling combined with functional annotation of 2,662 ESTs provides a molecular picture of Eucalyptus gunnii cold acclimation. trees, DOI : 10.1007/s00468-013-0918-5

Cassan-Wang H, Goue N, Saidi MN, Legay S, Sivadon P, Goffner D, and Grima-Pettenati J. 2013. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci 4, 189.

Courtial A, Soler M, Chateigner-Boutin A, Reymond M, Méchin V, Wang H, Grima-Pettenati J, Barriere Y. (2013) Breeding grasses for capacity to biofuel production or silage feeding value : An updated list of genes involved in maize secondary cell wall biosynthesis and assembly. Maydica 58 : 67-102.

Courtial A, Thomas J, Reymond M, Méchin V, Grima-Pettenati J, Barrière Y (2013) Targeted linkage map densification to improve cell wall related QTL detection and interpretation in maize. Theor Appl Genet 126  : 1151-1165.


Cassan-Wang H, Soler M, Yu H, Camargo, ELO, Carocha V, Ladouce N, Savelli B, Paiva JaP, Leple JC, and Grima-Pettenati J 2012. Reference Genes for High-Throughput Quantitative Reverse Transcription-PCR Analysis of Gene Expression in Organs and Tissues of Eucalyptus Grown in Various Environmental Conditions. Plant and Cell Physiology 53 , 2101-16.

Amelot N, Dorlhac De Borne F, San Clemente H, Mazars C, Grima-Pettenati J, Briere C 2012. Transcriptome analysis of tobacco BY-2 cells elicited by cryptogein reveals new potential actors of calcium-dependent and calcium-independent plant defense pathways. Cell Calcium 51 , 117-30.

De Micco V, Ruel K, Joseleau JP, Grima-Pettenati J, Aronne G. (2012) Xylem anatomy and cell wall ultrastructure of Nicotianan tabacum L. after lignin genetic modification through transcriptional activator EgMYB2. IAWA Journal, Vol. 33 (3) 1–18

Courtial C, Jourda C, Arribat S, Balzergue S, Huguet S, Reymond M, Grima-Pettenati J, Barrière Y (2012) Comparative expression of cell wall related genes in four maize RILs and one parental line of variable lignin content and cell wall degradability. Maydica 57:56-74

Azar S, Marque G, Clanet C, Marque C and Teulières C. 2012 Natural Variation in CBF Gene Sequence and Freezing Tolerance in Eucalyptus gunnii. ScienceMED, vol. 3, 259-265, Bologna

International book

Grima-Pettenati J, Soler M, Camargo E and Wang H. Transcriptional Regulation of the Lignin Biosynthetic Pathway Revisited : New Players and Insights. In Lise Jouanin and Catherine Lapierre, editors : Advances in Botanical Research, Vol. 61, Burlington : Academic Press, 2012, pp. 173-218. ISBN : 978-0-12-416023-1


Amelot N, Carrouche A, Danoun S, Bourque S, Haiech J, Pugin A, Ranjeva R, Grima-Pettenati J, Mazars C, Briere C (2011) Cryptogein, a fungal elicitor, remodels the phenylpropanoid metabolism of tobacco cell suspension cultures in a calcium-dependent manner. Plant Cell Environ 34 : 149-161

Navarro M, Ayax C, Martinez Y, Laur J, El Kayal W, Marque C, Teulieres C (2011) Two EguCBF1 genes overexpressed in Eucalyptus display a different impact on stress tolerance and plant development. Plant Biotechnol J 9 : 50-63

Paiva JAP, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PGS, Grattapaglia D, Song XA, Ammiraju JSS, Kudrna D, Wing RA, Freitas AT, Berges H, Grima-Pettenati J (2011) Advancing Eucalyptus genomics : identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. BMC Genomics 12 : 137

Gago J, Grima-Pettenati J, Gallego PP (2011) Vascular-specific expression of GUS and GFP reporter genes in transgenic grapevine (Vitis vinifera L. cv. Albarino) conferred by the EgCCR promoter of Eucalyptus gunnii. Plant Physiology and Biochemistry 49 : 413-419

Gion JM, Carouche A, Deweer S, Bedon F, Pichavant F, Charpentier JP, Bailleres H, Rozenberg P, Carocha V, Ognouabi N, Verhaegen D, Grima-Pettenati J, Vigneron P, Plomion C Comprehensive genetic dissection of wood properties in a widely-grown tropical tree : Eucalyptus. Bmc Genomics 12 : 301

Wang H, Soler M, Yu H, Camargo E, San Clemente H, Savelli B, Ladouce N, Paiva J, Grima-Pettenati1 J (2011) Master regulators of wood formation in Eucalyptus. Wang et al. BMC Proceedings 2011, 5(Suppl 7):P110.

Camargo E, Costa L, Soler M, Salazar M, Lepikson J, Gonçalves D, Marques W, Carazzolle M, Martinez Y, Grima-Pettenati J, Pereira G (2011) Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla x grandis evaluated by RNA-seq technology. BMC Proceedings, 5(Suppl 7):P106

Paiva J, Rodrigues JC, Fevereiro P, Neves L, Araújo C, Marques C, Freitas AT, Bergès H, Grima-Pettenati J (2011) Building up resources and knowledge to unravel transcriptomics dynamics underlying Eucalyptus globulus xylogenesis. BMC Proceedings, 5 (Suppl 7) : O52